1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:2.65e-23:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAH820_RS07715
Response regulator NarL family
Bacillus cereus AH820 · GCF_000021785
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000021785#BCAH820_RS07715Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:9.44e-27:203:58:58- Raw architecture: Response_reg:4:2.65e-23:116:113:111#HTH_LUXR:146:9.44e-27:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000021785::NC_011773.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1446078-1447762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAH820_1531RefSeq proteinWP_000598711.1
Context group ID
GCF_000021785::NC_011773.1::G00015Context members
BCAH820_RS07710BCAH820_RS07715
Partner locus tags
BCAH820_RS07710BCAH820_RS07715
Partner old locus tags
BCAH820_1530BCAH820_1531
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000598711.1Primary protein accession used for annex mappings.
UniProt accessionB7JGS2Primary UniProt accession resolved in the annex database.
UniProt IDB7JGS2_BACC0Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAH820_RS07715Primary locus identifier stored in the genes table.
Old locus tagBCAH820_1531Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011773.1Sequence record reported by the local genomic context database.
Genomic interval1 447 130-1 447 762 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 446 078-1 447 762 ntGCF_000021785::NC_011773.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000021785::NC_011773.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011773.1All displayed genes belong to this local TCS context.
Neighborhood span1 446 078-1 447 762 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 446 078 nt1 447 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAH820_RS07710GCF_000021785#BCAH820_RS07710
HKClassic
1 446 078-1 447 133 nt · Forward (+)
BCAH820_RS07715GCF_000021785#BCAH820_RS07715
RRNarLCurrent focus
1 447 130-1 447 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021785#BCAH820_RS07715The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2018953
Simplified PFAM architecture for RROC_2018953
PFAM domain coverage: 169 / 210 aa (80.5%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_2018953
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000021785#BCAH820_RS07715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 405 535 · GCF_000021785
AssemblyASM2178v1 · Complete Genomehaploid
Genome composition5 588 834 bp · 35,5% GCBacillus cereus AH820
Signal transduction countsGenes 107 · HK 57 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key