1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:0.00000000000000122:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAMEG_RS16205
Histidine kinase, Classic
Bacillus anthracis str. CDC 684 · GCF_000021445
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000021445#BAMEG_RS16205Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 466 aa (52.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:4.37e-19:304:67:643 HATPase_c#3
350-461 aa · 112 aa · 24.0% of protein
Raw token
HATPase_c:350:8.38e-33:461:112:109- Raw architecture: HAMP:168:0.00000000000000122:234:67:69#HisKA:238:4.37e-19:304:67:64#HATPase_c:350:8.38e-33:461:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000021445::NC_012581.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2977150-2979225Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAMEG_3284RefSeq proteinWP_000494832.1
Context group ID
GCF_000021445::NC_012581.1::G00031Context members
BAMEG_RS16205BAMEG_RS16210
Partner locus tags
BAMEG_RS16205BAMEG_RS16210
Partner old locus tags
BAMEG_3284BAMEG_3285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000494832.1Primary protein accession used for annex mappings.
UniProt accessionQ6HLP4Primary UniProt accession resolved in the annex database.
UniProt IDQ6HLP4_BACHKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAMEG_RS16205Primary locus identifier stored in the genes table.
Old locus tagBAMEG_3284Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012581.1Sequence record reported by the local genomic context database.
Genomic interval2 977 150-2 978 550 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 977 150-2 979 225 ntGCF_000021445::NC_012581.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000021445::NC_012581.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012581.1All displayed genes belong to this local TCS context.
Neighborhood span2 977 150-2 979 225 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 977 150 nt2 979 225 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAMEG_RS16205GCF_000021445#BAMEG_RS16205
HKClassicCurrent focus
2 977 150-2 978 550 nt · Reverse (-)
BAMEG_RS16210GCF_000021445#BAMEG_RS16210
RROmpR
2 978 554-2 979 225 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS06505Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1761654
Simplified PFAM architecture for HKOC_1761654
PFAM domain coverage: 224 / 466 aa (48.1%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-460]
- Domain count: 3
- Matched identifier: HKOC_1761654
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS06505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 568 206 · GCF_000021445
AssemblyASM2144v1 · Complete Genomehaploid
Genome composition5 506 763 bp · 35,0% GCBacillus anthracis str. CDC 684
Signal transduction countsGenes 96 · HK 46 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key