1 HisKA_3#1
219-283 aa · 65 aa · 14.7% of protein
Raw token
HisKA_3:219:0.0000000000613:283:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLON_RS02475
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 · GCF_000020425
ClassHKTypeClassicLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020425#BLON_RS02475Stable P2CS identifier used across views.
GenomeGCF_000020425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 441 aa (32.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
349-427 aa · 79 aa · 17.9% of protein
Raw token
HATPase_c:349:0.0000737:427:85:109- Raw architecture: HisKA_3:219:0.0000000000613:283:65:68#HATPase_c:349:0.0000737:427:85:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020425::NC_011593.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span551474-553523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBlon_0482RefSeq proteinWP_012576894.1
Context group ID
GCF_000020425::NC_011593.1::G00007Context members
BLON_RS02470BLON_RS02475
Partner locus tags
BLON_RS02470BLON_RS02475
Partner old locus tags
Blon_0481Blon_0482
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576894.1Primary protein accession used for annex mappings.
UniProt accessionB7GNY4Primary UniProt accession resolved in the annex database.
UniProt IDB7GNY4_BIFLSDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLON_RS02475Primary locus identifier stored in the genes table.
Old locus tagBlon_0482Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011593.1Sequence record reported by the local genomic context database.
Genomic interval552 198-553 523 nt1 326 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span551 474-553 523 ntGCF_000020425::NC_011593.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020425::NC_011593.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011593.1All displayed genes belong to this local TCS context.
Neighborhood span551 474-553 523 nt2 050 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
551 474 nt553 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLON_RS02470GCF_000020425#BLON_RS02470
RRNarL
551 474-552 181 nt · Reverse (-)
BLON_RS02475GCF_000020425#BLON_RS02475
HKClassicCurrent focus
552 198-553 523 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS02475The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2061407
Simplified PFAM architecture for HKOC_2061407
PFAM domain coverage: 68 / 441 aa (15.4%)
1 aa441 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[219-286]
- Domain count: 1
- Matched identifier: HKOC_2061407
- Positioned domains: HisKA_3 219-286
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS02475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 391 904 · GCF_000020425
AssemblyASM2042v1 · Complete Genomehaploid
Genome composition2 832 748 bp · 60,0% GCBifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key