1 Response_reg#1
4-121 aa · 118 aa · 47.8% of protein
Raw token
Response_reg:4:3.38e-25:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLON_RS02425
Response regulator NarL family
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 · GCF_000020425
ClassRRTypeNarLLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020425#BLON_RS02425Stable P2CS identifier used across views.
GenomeGCF_000020425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 247 aa (70.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-215 aa · 56 aa · 22.7% of protein
Raw token
HTH_LUXR:160:0.0000000000000232:215:56:58- Raw architecture: Response_reg:4:3.38e-25:121:118:111#HTH_LUXR:160:0.0000000000000232:215:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020425::NC_011593.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span541791-542534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBlon_0471RefSeq proteinWP_012576883.1
Context group ID
GCF_000020425::NC_011593.1::G00006Context members
BLON_RS02425
Partner locus tags
BLON_RS02425
Partner old locus tags
Blon_0471
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576883.1Primary protein accession used for annex mappings.
UniProt accessionB7GNX3Primary UniProt accession resolved in the annex database.
UniProt IDB7GNX3_BIFLSDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLON_RS02425Primary locus identifier stored in the genes table.
Old locus tagBlon_0471Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011593.1Sequence record reported by the local genomic context database.
Genomic interval541 791-542 534 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span541 791-542 534 ntGCF_000020425::NC_011593.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020425::NC_011593.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011593.1All displayed genes belong to this local TCS context.
Neighborhood span541 791-542 534 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
541 791 nt542 534 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLON_RS02425GCF_000020425#BLON_RS02425
RRNarLCurrent focus
541 791-542 534 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS02425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0756335
Simplified PFAM architecture for RROC_0756335
PFAM domain coverage: 171 / 247 aa (69.2%)
1 aa247 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[163-215]
- Domain count: 2
- Matched identifier: RROC_0756335
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; GerE 163-215 ; GerE 163-215
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS02425
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 110 total members. Page 1 / 3.
GCF_000020425#BLON_RS02425 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 391 904 · GCF_000020425
AssemblyASM2042v1 · Complete Genomehaploid
Genome composition2 832 748 bp · 60,0% GCBifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key