1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:3.82e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLON_RS01885
Response regulator OmpR family
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 · GCF_000020425
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020425#BLON_RS01885Stable P2CS identifier used across views.
GenomeGCF_000020425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:1.37e-33:229:77:77- Raw architecture: Response_reg:4:3.82e-38:113:111:111#Trans_reg_C:153:1.37e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020425::NC_011593.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span419262-421529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBlon_0362RefSeq proteinWP_029680021.1
Context group ID
GCF_000020425::NC_011593.1::G00004Context members
BLON_RS01880BLON_RS01885
Partner locus tags
BLON_RS01880BLON_RS01885
Partner old locus tags
Blon_0361Blon_0362
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029680021.1Primary protein accession used for annex mappings.
UniProt accessionA0A7U4KD77Primary UniProt accession resolved in the annex database.
UniProt IDA0A7U4KD77_BIFLNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLON_RS01885Primary locus identifier stored in the genes table.
Old locus tagBlon_0362Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011593.1Sequence record reported by the local genomic context database.
Genomic interval420 825-421 529 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span419 262-421 529 ntGCF_000020425::NC_011593.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020425::NC_011593.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011593.1All displayed genes belong to this local TCS context.
Neighborhood span419 262-421 529 nt2 268 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
419 262 nt421 529 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLON_RS01880GCF_000020425#BLON_RS01880
HKClassic
419 262-420 641 nt · Forward (+)
BLON_RS01885GCF_000020425#BLON_RS01885
RROmpRCurrent focus
420 825-421 529 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS01885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047222
Simplified PFAM architecture for RROC_1047222
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1047222
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-228 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS01885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 391 904 · GCF_000020425
AssemblyASM2042v1 · Complete Genomehaploid
Genome composition2 832 748 bp · 60,0% GCBifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key