1 HAMP#1
205-267 aa · 63 aa · 12.5% of protein
Raw token
HAMP:205:0.00000000475:267:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERKBAB4_RS23330
Histidine kinase, Classic
Bacillus mycoides KBAB4 · GCF_000018825
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000018825#BCERKBAB4_RS23330Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 502 aa (47.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.00000000000000681:347:68:643 HATPase_c#3
394-501 aa · 108 aa · 21.5% of protein
Raw token
HATPase_c:394:8.3e-23:501:109:109- Raw architecture: HAMP:205:0.00000000475:267:66:69#HisKA:280:0.00000000000000681:347:68:64#HATPase_c:394:8.3e-23:501:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000018825::NC_010184.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4637114-4639307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBcerKBAB4_4665RefSeq proteinWP_012261892.1
Context group ID
GCF_000018825::NC_010184.1::G00055Context members
BCERKBAB4_RS23330BCERKBAB4_RS23335
Partner locus tags
BCERKBAB4_RS23330BCERKBAB4_RS23335
Partner old locus tags
BcerKBAB4_4665BcerKBAB4_4666
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012261892.1Primary protein accession used for annex mappings.
UniProt accessionA9VM45Primary UniProt accession resolved in the annex database.
UniProt IDA9VM45_BACMKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERKBAB4_RS23330Primary locus identifier stored in the genes table.
Old locus tagBcerKBAB4_4665Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010184.1Sequence record reported by the local genomic context database.
Genomic interval4 637 114-4 638 622 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 637 114-4 639 307 ntGCF_000018825::NC_010184.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000018825::NC_010184.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010184.1All displayed genes belong to this local TCS context.
Neighborhood span4 637 114-4 639 307 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 637 114 nt4 639 307 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERKBAB4_RS23330GCF_000018825#BCERKBAB4_RS23330
HKClassicCurrent focus
4 637 114-4 638 622 nt · Reverse (-)
BCERKBAB4_RS23335GCF_000018825#BCERKBAB4_RS23335
RROmpR
4 638 606-4 639 307 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS23330The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1463885
Simplified PFAM architecture for HKOC_1463885
PFAM domain coverage: 217 / 502 aa (43.2%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-267] | HisKA[280-346] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1463885
- Positioned domains: HAMP 225-267 ; HisKA 280-346 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS23330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 315 730 · GCF_000018825
AssemblyASM1882v1 · Complete Genomehaploid
Genome composition5 872 743 bp · 35,5% GCBacillus mycoides KBAB4
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key