1 HisKA#1
208-271 aa · 64 aa · 15.3% of protein
Raw token
HisKA:208:0.000000000000756:271:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERKBAB4_RS15825
Histidine kinase, Classic
Bacillus mycoides KBAB4 · GCF_000018825
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000018825#BCERKBAB4_RS15825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 418 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-417 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:314:8.64e-22:417:107:109- Raw architecture: HisKA:208:0.000000000000756:271:64:64#HATPase_c:314:8.64e-22:417:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000018825::NC_010184.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3174907-3176163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBcerKBAB4_3129RefSeq proteinWP_012261322.1
Context group ID
GCF_000018825::NC_010184.1::G00044Context members
BCERKBAB4_RS15825
Partner locus tags
BCERKBAB4_RS15825
Partner old locus tags
BcerKBAB4_3129
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012261322.1Primary protein accession used for annex mappings.
UniProt accessionA9VMN3Primary UniProt accession resolved in the annex database.
UniProt IDA9VMN3_BACMKDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERKBAB4_RS15825Primary locus identifier stored in the genes table.
Old locus tagBcerKBAB4_3129Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010184.1Sequence record reported by the local genomic context database.
Genomic interval3 174 907-3 176 163 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 174 907-3 176 163 ntGCF_000018825::NC_010184.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000018825::NC_010184.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010184.1All displayed genes belong to this local TCS context.
Neighborhood span3 174 907-3 176 163 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 174 907 nt3 176 163 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERKBAB4_RS15825GCF_000018825#BCERKBAB4_RS15825
HKClassicCurrent focus
3 174 907-3 176 163 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS15825The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2285069
Simplified PFAM architecture for HKOC_2285069
PFAM domain coverage: 165 / 418 aa (39.5%)
1 aa418 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-270] | HATPase_c[316-417]
- Domain count: 2
- Matched identifier: HKOC_2285069
- Positioned domains: HisKA 208-270 ; HATPase_c 316-417
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS15825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 315 730 · GCF_000018825
AssemblyASM1882v1 · Complete Genomehaploid
Genome composition5 872 743 bp · 35,5% GCBacillus mycoides KBAB4
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key