1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000174:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERKBAB4_RS12350
Histidine kinase, Classic
Bacillus mycoides KBAB4 · GCF_000018825
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000018825#BCERKBAB4_RS12350Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 490 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000383:323:66:643 HATPase_c#3
369-469 aa · 101 aa · 20.6% of protein
Raw token
HATPase_c:369:7.71e-17:469:101:109- Raw architecture: HAMP:164:0.00000000000000174:233:70:69#HisKA:258:0.0000000000000383:323:66:64#HATPase_c:369:7.71e-17:469:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000018825::NC_010184.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2502770-2504900Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBcerKBAB4_2423RefSeq proteinWP_012260987.1
Context group ID
GCF_000018825::NC_010184.1::G00033Context members
BCERKBAB4_RS12350BCERKBAB4_RS12355
Partner locus tags
BCERKBAB4_RS12350BCERKBAB4_RS12355
Partner old locus tags
BcerKBAB4_2423BcerKBAB4_2424
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012260987.1Primary protein accession used for annex mappings.
UniProt accessionA9VGS1Primary UniProt accession resolved in the annex database.
UniProt IDA9VGS1_BACMKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERKBAB4_RS12350Primary locus identifier stored in the genes table.
Old locus tagBcerKBAB4_2423Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010184.1Sequence record reported by the local genomic context database.
Genomic interval2 502 770-2 504 242 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 502 770-2 504 900 ntGCF_000018825::NC_010184.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000018825::NC_010184.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010184.1All displayed genes belong to this local TCS context.
Neighborhood span2 502 770-2 504 900 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 502 770 nt2 504 900 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERKBAB4_RS12350GCF_000018825#BCERKBAB4_RS12350
HKClassicCurrent focus
2 502 770-2 504 242 nt · Reverse (-)
BCERKBAB4_RS12355GCF_000018825#BCERKBAB4_RS12355
RROmpR
2 504 235-2 504 900 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS12350The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533661
Simplified PFAM architecture for HKOC_1533661
PFAM domain coverage: 226 / 490 aa (46.1%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1533661
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS12350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 315 730 · GCF_000018825
AssemblyASM1882v1 · Complete Genomehaploid
Genome composition5 872 743 bp · 35,5% GCBacillus mycoides KBAB4
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key