1 Response_reg#1
3-123 aa · 121 aa · 31.8% of protein
Raw token
Response_reg:3:6.5e-31:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERKBAB4_RS04965
Response regulator, RsbU family
Bacillus mycoides KBAB4 · GCF_000018825
ClassRRTypeRsbULength380 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000018825#BCERKBAB4_RS04965Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpoIIE
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage309 / 380 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 SpoIIESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation2 items
2 SpoIIE#2
190-377 aa · 188 aa · 49.5% of protein
Raw token
SpoIIE:190:4.1e-42:377:194:190- Raw architecture: Response_reg:3:6.5e-31:123:121:111#SpoIIE:190:4.1e-42:377:194:190
- Domain description: 1 Response_reg,1 SpoIIE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000018825::NC_010184.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span988124-989266Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBcerKBAB4_0905RefSeq proteinWP_002140679.1
Context group ID
GCF_000018825::NC_010184.1::G00011Context members
BCERKBAB4_RS04965
Partner locus tags
BCERKBAB4_RS04965
Partner old locus tags
BcerKBAB4_0905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002140679.1Primary protein accession used for annex mappings.
UniProt accessionA0A653WKD5Primary UniProt accession resolved in the annex database.
UniProt IDA0A653WKD5_BACMYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERKBAB4_RS04965Primary locus identifier stored in the genes table.
Old locus tagBcerKBAB4_0905Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010184.1Sequence record reported by the local genomic context database.
Genomic interval988 124-989 266 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span988 124-989 266 ntGCF_000018825::NC_010184.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000018825::NC_010184.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010184.1All displayed genes belong to this local TCS context.
Neighborhood span988 124-989 266 nt1 143 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
988 124 nt989 266 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERKBAB4_RS04965GCF_000018825#BCERKBAB4_RS04965
RRRsbUCurrent focus
988 124-989 266 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS04965The current gene is the representative for this cluster.
PFAM architectureResponse_reg + SpoIIE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0422090
Simplified PFAM architecture for RROC_0422090
PFAM domain coverage: 308 / 380 aa (81.1%)
1 aa380 aa
Response_regSpoIIE
- Simplified architecture: Response_reg + SpoIIE
- Raw architecture: Response_reg[3-122] | SpoIIE[190-377]
- Domain count: 2
- Matched identifier: RROC_0422090
- Positioned domains: Response_reg 3-122 ; Response_reg 3-122 ; SpoIIE 190-377 ; SpoIIE 190-377
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS04965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 315 730 · GCF_000018825
AssemblyASM1882v1 · Complete Genomehaploid
Genome composition5 872 743 bp · 35,5% GCBacillus mycoides KBAB4
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key