1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:7.96e-19:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERKBAB4_RS04540
Response regulator, unclassified
Bacillus mycoides KBAB4 · GCF_000018825
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000018825#BCERKBAB4_RS04540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.96e-19:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000018825::NC_010184.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span909975-910652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBcerKBAB4_0812RefSeq proteinWP_012260420.1
Context group ID
GCF_000018825::NC_010184.1::G00010Context members
BCERKBAB4_RS04540
Partner locus tags
BCERKBAB4_RS04540
Partner old locus tags
BcerKBAB4_0812
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012260420.1Primary protein accession used for annex mappings.
UniProt accessionA9VH77Primary UniProt accession resolved in the annex database.
UniProt IDA9VH77_BACMKDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERKBAB4_RS04540Primary locus identifier stored in the genes table.
Old locus tagBcerKBAB4_0812Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010184.1Sequence record reported by the local genomic context database.
Genomic interval909 975-910 652 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span909 975-910 652 ntGCF_000018825::NC_010184.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000018825::NC_010184.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010184.1All displayed genes belong to this local TCS context.
Neighborhood span909 975-910 652 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
909 975 nt910 652 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERKBAB4_RS04540GCF_000018825#BCERKBAB4_RS04540
RRunclassifiedCurrent focus
909 975-910 652 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS04540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462821
Simplified PFAM architecture for RROC_1462821
PFAM domain coverage: 177 / 225 aa (78.7%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-115] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1462821
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_64 158-222 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS04540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 315 730 · GCF_000018825
AssemblyASM1882v1 · Complete Genomehaploid
Genome composition5 872 743 bp · 35,5% GCBacillus mycoides KBAB4
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key