1 Response_reg#1
7-117 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:7:7.93e-39:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECB_RS17230
Response regulator OmpR family
Escherichia coli B str. REL606 · GCF_000017985
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000017985#ECB_RS17230Stable P2CS identifier used across views.
GenomeGCF_000017985Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 239 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:156:1.36e-28:232:77:77- Raw architecture: Response_reg:7:7.93e-39:117:111:111#Trans_reg_C:156:1.36e-28:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000017985::NC_012967.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3463200-3465268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECB_03257RefSeq proteinWP_001157757.1
Context group ID
GCF_000017985::NC_012967.1::G00028Context members
ECB_RS17225ECB_RS17230
Partner locus tags
ECB_RS17225ECB_RS17230
Partner old locus tags
ECB_03256ECB_03257
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001157757.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECB_RS17230Primary locus identifier stored in the genes table.
Old locus tagECB_03257Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012967.1Sequence record reported by the local genomic context database.
Genomic interval3 464 549-3 465 268 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 463 200-3 465 268 ntGCF_000017985::NC_012967.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000017985::NC_012967.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012967.1All displayed genes belong to this local TCS context.
Neighborhood span3 463 200-3 465 268 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 463 200 nt3 465 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECB_RS17225GCF_000017985#ECB_RS17225
HKClassic
3 463 200-3 464 552 nt · Reverse (-)
ECB_RS17230GCF_000017985#ECB_RS17230
RROmpRCurrent focus
3 464 549-3 465 268 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000017985#ECB_RS17230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905416
Simplified PFAM architecture for RROC_0905416
PFAM domain coverage: 187 / 239 aa (78.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_0905416
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; Trans_reg_C 157-232 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_000017985#ECB_RS17230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 413 997 · GCF_000017985
AssemblyASM1798v1 · Complete Genomehaploid
Genome composition4 629 812 bp · 51,0% GCEscherichia coli B str. REL606
Signal transduction countsGenes 58 · HK 28 · RR 30CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key