1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:1.15e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECB_RS09965
Response regulator OmpR family
Escherichia coli B str. REL606 · GCF_000017985
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000017985#ECB_RS09965Stable P2CS identifier used across views.
GenomeGCF_000017985Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:146:4.44e-30:218:74:77- Raw architecture: Response_reg:3:1.15e-32:112:111:111#Trans_reg_C:146:4.44e-30:218:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000017985::NC_012967.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1974793-1976822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECB_01884RefSeq proteinWP_001339045.1
Context group ID
GCF_000017985::NC_012967.1::G00014Context members
ECB_RS09960ECB_RS09965
Partner locus tags
ECB_RS09960ECB_RS09965
Partner old locus tags
ECB_01883ECB_01884
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001339045.1Primary protein accession used for annex mappings.
UniProt accessionI6ELZ7Primary UniProt accession resolved in the annex database.
UniProt IDI6ELZ7_SHIBODisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECB_RS09965Primary locus identifier stored in the genes table.
Old locus tagECB_01884Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012967.1Sequence record reported by the local genomic context database.
Genomic interval1 976 151-1 976 822 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 974 793-1 976 822 ntGCF_000017985::NC_012967.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000017985::NC_012967.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012967.1All displayed genes belong to this local TCS context.
Neighborhood span1 974 793-1 976 822 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 974 793 nt1 976 822 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECB_RS09960GCF_000017985#ECB_RS09960
HKClassic
1 974 793-1 976 151 nt · Reverse (-)
ECB_RS09965GCF_000017985#ECB_RS09965
RROmpRCurrent focus
1 976 151-1 976 822 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008865#ECs_2707Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0653015
Simplified PFAM architecture for RROC_0653015
PFAM domain coverage: 183 / 260 aa (70.4%)
1 aa260 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[40-149] | Trans_reg_C[183-255]
- Domain count: 2
- Matched identifier: RROC_0653015
- Positioned domains: Response_reg 40-149 ; Response_reg 40-149 ; Trans_reg_C 183-255 ; Trans_reg_C 183-255
Cluster members and taxonomy
Representative gene: GCF_000008865#ECs_2707
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 413 997 · GCF_000017985
AssemblyASM1798v1 · Complete Genomehaploid
Genome composition4 629 812 bp · 51,0% GCEscherichia coli B str. REL606
Signal transduction countsGenes 58 · HK 28 · RR 30CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key