1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:4.59e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BALH_RS14200
Response regulator OmpR family
Bacillus thuringiensis str. Al Hakam · GCF_000015065
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000015065#BALH_RS14200Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 215 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
139-210 aa · 72 aa · 33.5% of protein
Raw token
Trans_reg_C:139:8.87e-28:210:77:77- Raw architecture: Response_reg:3:4.59e-34:112:111:111#Trans_reg_C:139:8.87e-28:210:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000015065::NC_008600.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2726846-2728862Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBALH_2567RefSeq proteinWP_000865972.1
Context group ID
GCF_000015065::NC_008600.1::G00037Context members
BALH_RS14195BALH_RS14200
Partner locus tags
BALH_RS14195BALH_RS14200
Partner old locus tags
BALH_2566BALH_2567
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000865972.1Primary protein accession used for annex mappings.
UniProt accessionQ6HHN1Primary UniProt accession resolved in the annex database.
UniProt IDQ6HHN1_BACHKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBALH_RS14200Primary locus identifier stored in the genes table.
Old locus tagBALH_2567Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_008600.1Sequence record reported by the local genomic context database.
Genomic interval2 728 215-2 728 862 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 726 846-2 728 862 ntGCF_000015065::NC_008600.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000015065::NC_008600.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_008600.1All displayed genes belong to this local TCS context.
Neighborhood span2 726 846-2 728 862 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 726 846 nt2 728 862 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BALH_RS14195GCF_000015065#BALH_RS14195
HKClassic
2 726 846-2 728 222 nt · Reverse (-)
BALH_RS14200GCF_000015065#BALH_RS14200
RROmpRCurrent focus
2 728 215-2 728 862 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008505#BT9727_RS13840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906502
Simplified PFAM architecture for RROC_1906502
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1906502
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_000008505#BT9727_RS13840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 412 694 · GCF_000015065
AssemblyASM1506v1 · Complete Genomehaploid
Genome composition5 313 030 bp · 35,5% GCBacillus thuringiensis str. Al Hakam
Signal transduction countsGenes 110 · HK 58 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key