1 GAF#1
268-386 aa · 119 aa · 19.5% of protein
Raw token
GAF:268:0.0000137:386:127:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BALH_RS03395
Histidine kinase, Classic
Bacillus thuringiensis str. Al Hakam · GCF_000015065
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000015065#BALH_RS03395Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 610 aa (44.4%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
403-467 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:403:2.34e-18:467:65:683 HATPase_c#3
517-603 aa · 87 aa · 14.3% of protein
Raw token
HATPase_c:517:0.0000000000000608:603:97:109- Raw architecture: GAF:268:0.0000137:386:127:133#HisKA_3:403:2.34e-18:467:65:68#HATPase_c:517:0.0000000000000608:603:97:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000015065::NC_008600.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span666351-668826Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBALH_0573RefSeq proteinWP_000655906.1
Context group ID
GCF_000015065::NC_008600.1::G00008Context members
BALH_RS03395BALH_RS03400
Partner locus tags
BALH_RS03395BALH_RS03400
Partner old locus tags
BALH_0573BALH_0574
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000655906.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBALH_RS03395Primary locus identifier stored in the genes table.
Old locus tagBALH_0573Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_008600.1Sequence record reported by the local genomic context database.
Genomic interval666 351-668 183 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span666 351-668 826 ntGCF_000015065::NC_008600.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000015065::NC_008600.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_008600.1All displayed genes belong to this local TCS context.
Neighborhood span666 351-668 826 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
666 351 nt668 826 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BALH_RS03395GCF_000015065#BALH_RS03395
HKClassicCurrent focus
666 351-668 183 nt · Forward (+)
BALH_RS03400GCF_000015065#BALH_RS03400
RRNarL
668 185-668 826 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000015065#BALH_RS03395The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1004466
Simplified PFAM architecture for HKOC_1004466
PFAM domain coverage: 157 / 610 aa (25.7%)
1 aa610 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[513-604]
- Domain count: 2
- Matched identifier: HKOC_1004466
- Positioned domains: HisKA_3 403-467 ; HATPase_c 513-604
Cluster members and taxonomy
Representative gene: GCF_000015065#BALH_RS03395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 412 694 · GCF_000015065
AssemblyASM1506v1 · Complete Genomehaploid
Genome composition5 313 030 bp · 35,5% GCBacillus thuringiensis str. Al Hakam
Signal transduction countsGenes 110 · HK 58 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key