Gene detail

FTN_RS07435

Histidine kinase, Classic

Francisella tularensis subsp. novicida U112 · GCF_000014645

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000014645#FTN_RS07435Stable P2CS identifier used across views.

GenomeGCF_000014645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

Selected clusterHKOC_2866063Run 6 · 22 sequences · id 100% · cov 80% · representative

External referencesWP_003040419.1 · MIST4 FTN_RS07435RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length323 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage163 / 323 aa (50.5%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa323 aa

Domain-by-domain annotation2 items

1 HisKA#1

116-170 aa · 55 aa · 17.0% of protein

Raw tokenHisKA:116:0.000000212:170:57:64

2 HATPase_c#2

215-322 aa · 108 aa · 33.4% of protein

Raw tokenHATPase_c:215:8.08e-24:322:108:109

Raw architecture: HisKA:116:0.000000212:170:57:64#HATPase_c:215:8.08e-24:322:108:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000014645::NC_008601.1::G00001

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span1540850-1542560Genomic interval covered by the local TCS group.

Identifiers

Old locus tagFTN_1453RefSeq proteinWP_003040419.1

Context group IDGCF_000014645::NC_008601.1::G00001

Context members

FTN_RS07430FTN_RS07435

Partner locus tags

FTN_RS07430FTN_RS07435

Partner old locus tags

FTN_1452FTN_1453

Partner protein IDs

WP_003022431.1 WP_003040419.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_003040419.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagFTN_RS07435Primary locus identifier stored in the genes table.

Old locus tagFTN_1453Legacy locus tag recovered from the local context mapping.

Contig / repliconNC_008601.1Sequence record reported by the local genomic context database.

Genomic interval1 541 589-1 542 560 nt972 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span1 540 850-1 542 560 ntGCF_000014645::NC_008601.1::G00001

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000014645::NC_008601.1::G00001

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNC_008601.1All displayed genes belong to this local TCS context.

Neighborhood span1 540 850-1 542 560 nt1 711 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

1 540 850 nt1 542 560 nt

+-FTN_RS07430 FTN_RS07435

Neighborhood gene cards

2 genes in the current local neighborhood.

FTN_RS07430GCF_000014645#FTN_RS07430

RROmpR

1 540 850-1 541 539 nt · Forward (+)

Old locus FTN_1452RefSeq WP_003022431.1

Open gene

FTN_RS07435GCF_000014645#FTN_RS07435

HKClassicCurrent focus

1 541 589-1 542 560 nt · Forward (+)

Old locus FTN_1453RefSeq WP_003040419.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2866063HK

Run 622 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_2866063Run 6 · HK · 22 sequences

Representative sequenceGCF_000014645#FTN_RS07435The current gene is the representative for this cluster.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_2866063

Simplified PFAM architecture for HKOC_2866063

PFAM domain coverage: 164 / 323 aa (50.8%)

1 aa323 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[115-170] | HATPase_c[215-322]
Domain count: 2
Matched identifier: HKOC_2866063
Positioned domains: HisKA 115-170 ; HATPase_c 215-322

Cluster members and taxonomy

Representative gene: GCF_000014645#FTN_RS07435

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 401 614 · GCF_000014645

AssemblyASM1464v1 · Complete Genomehaploid

Genome composition1 910 031 bp · 32,5% GCFrancisella tularensis subsp. novicida U112

Signal transduction countsGenes 6 · HK 3 · RR 3CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella

Open genome Search genes in genome Search HK genes NCBI assembly files

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Preview from the same derived genome key