1 Response_reg#1
17-129 aa · 113 aa · 47.5% of protein
Raw token
Response_reg:17:0.000000000034:129:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD_RS00285
Response regulator NarL family
Bifidobacterium adolescentis ATCC 15703 · GCF_000010425
ClassRRTypeNarLLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000010425#BAD_RS00285Stable P2CS identifier used across views.
GenomeGCF_000010425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 238 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
172-228 aa · 57 aa · 23.9% of protein
Raw token
HTH_LUXR:172:0.0000000000000217:228:57:58- Raw architecture: Response_reg:17:0.000000000034:129:114:111#HTH_LUXR:172:0.0000000000000217:228:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000010425::NC_008618.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span67659-68375Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAD_0055RefSeq proteinWP_080505074.1
Context group ID
GCF_000010425::NC_008618.1::G00002Context members
BAD_RS00285
Partner locus tags
BAD_RS00285
Partner old locus tags
BAD_0055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080505074.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD_RS00285Primary locus identifier stored in the genes table.
Old locus tagBAD_0055Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_008618.1Sequence record reported by the local genomic context database.
Genomic interval67 659-68 375 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 659-68 375 ntGCF_000010425::NC_008618.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000010425::NC_008618.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_008618.1All displayed genes belong to this local TCS context.
Neighborhood span67 659-68 375 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 659 nt68 375 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAD_RS00285GCF_000010425#BAD_RS00285
RRNarLCurrent focus
67 659-68 375 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS00285The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932261
Simplified PFAM architecture for RROC_0932261
PFAM domain coverage: 163 / 238 aa (68.5%)
1 aa238 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[16-124] | GerE[174-227]
- Domain count: 2
- Matched identifier: RROC_0932261
- Positioned domains: Response_reg 16-124 ; Response_reg 16-124 ; GerE 174-227 ; GerE 174-227
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS00285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 367 928 · GCF_000010425
AssemblyASM1042v1 · Complete Genomereference genome · haploid
Genome composition2 089 645 bp · 59,0% GCBifidobacterium adolescentis ATCC 15703
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key