1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:2.81e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y75_RS05190
Response regulator OmpR family
Escherichia coli str. K-12 substr. W3110 · GCF_000010245
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000010245#Y75_RS05190Stable P2CS identifier used across views.
GenomeGCF_000010245Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 230 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.7% of protein
Raw token
Trans_reg_C:153:3.48e-20:225:78:77- Raw architecture: Response_reg:5:2.81e-34:114:111:111#Trans_reg_C:153:3.48e-20:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000010245::NC_007779.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1057684-1058376Genomic interval covered by the local TCS group.
Identifiers
Old locus tagY75_p0968RefSeq proteinWP_001120125.1
Context group ID
GCF_000010245::NC_007779.1::G00007Context members
Y75_RS05190
Partner locus tags
Y75_RS05190
Partner old locus tags
Y75_p0968
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001120125.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7FHE7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7FHE7_ECOLXDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY75_RS05190Primary locus identifier stored in the genes table.
Old locus tagY75_p0968Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007779.1Sequence record reported by the local genomic context database.
Genomic interval1 057 684-1 058 376 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 057 684-1 058 376 ntGCF_000010245::NC_007779.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000010245::NC_007779.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007779.1All displayed genes belong to this local TCS context.
Neighborhood span1 057 684-1 058 376 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 057 684 nt1 058 376 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y75_RS05190GCF_000010245#Y75_RS05190
RROmpRCurrent focus
1 057 684-1 058 376 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199623
Simplified PFAM architecture for RROC_1199623
PFAM domain coverage: 182 / 230 aa (79.1%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1199623
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000005845#b0995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 316 407 · GCF_000010245
AssemblyASM1024v1 · Complete Genomehaploid
Genome composition4 646 332 bp · 51,0% GCEscherichia coli str. K-12 substr. W3110
Signal transduction countsGenes 61 · HK 29 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key