1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:2.95e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLD_RS05425
Response regulator OmpR family
Bifidobacterium longum DJO10A · GCF_000008945
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000008945#BLD_RS05425Stable P2CS identifier used across views.
GenomeGCF_000008945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:1.37e-33:229:77:77- Raw architecture: Response_reg:4:2.95e-38:113:111:111#Trans_reg_C:153:1.37e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000008945::NC_010816.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1260957-1263190Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLD_1073RefSeq proteinWP_010081148.1
Context group ID
GCF_000008945::NC_010816.1::G00009Context members
BLD_RS05425BLD_RS05430
Partner locus tags
BLD_RS05425BLD_RS05430
Partner old locus tags
BLD_1073BLD_1074
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010081148.1Primary protein accession used for annex mappings.
UniProt accessionB3DTQ0Primary UniProt accession resolved in the annex database.
UniProt IDB3DTQ0_BIFLDDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLD_RS05425Primary locus identifier stored in the genes table.
Old locus tagBLD_1073Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010816.1Sequence record reported by the local genomic context database.
Genomic interval1 260 957-1 261 661 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 260 957-1 263 190 ntGCF_000008945::NC_010816.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000008945::NC_010816.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010816.1All displayed genes belong to this local TCS context.
Neighborhood span1 260 957-1 263 190 nt2 234 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 260 957 nt1 263 190 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLD_RS05425GCF_000008945#BLD_RS05425
RROmpRCurrent focus
1 260 957-1 261 661 nt · Reverse (-)
BLD_RS05430GCF_000008945#BLD_RS05430
HKClassic
1 261 859-1 263 190 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008945#BLD_RS05425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047075
Simplified PFAM architecture for RROC_1047075
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1047075
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-228 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_000008945#BLD_RS05425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 205 913 · GCF_000008945
AssemblyASM894v1 · Complete Genomehaploid
Genome composition2 389 526 bp · 60,0% GCBifidobacterium longum DJO10A
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key