1 Response_reg#1
40-149 aa · 110 aa · 42.3% of protein
Raw token
Response_reg:40:7.84e-33:149:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECs_2707
Response regulator OmpR family
Escherichia coli O157:H7 str. Sakai · GCF_000008865
ClassRRTypeOmpRLength260 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000008865#ECs_2707Stable P2CS identifier used across views.
GenomeGCF_000008865Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length260 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 260 aa (70.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa260 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
183-255 aa · 73 aa · 28.1% of protein
Raw token
Trans_reg_C:183:3.38e-30:255:74:77- Raw architecture: Response_reg:40:7.84e-33:149:111:111#Trans_reg_C:183:3.38e-30:255:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000008865::NC_002695.2::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2661470-2663610Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000008865::NC_002695.2::G00016Context members
ECs_2706ECs_2707
Partner locus tags
ECs_2706ECs_2707
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for NP_310734.3.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECs_2707Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_002695.2Sequence record reported by the local genomic context database.
Genomic interval2 662 828-2 663 610 nt783 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 661 470-2 663 610 ntGCF_000008865::NC_002695.2::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000008865::NC_002695.2::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002695.2All displayed genes belong to this local TCS context.
Neighborhood span2 661 470-2 663 610 nt2 141 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 661 470 nt2 663 610 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008865#ECs_2707The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0653015
Simplified PFAM architecture for RROC_0653015
PFAM domain coverage: 183 / 260 aa (70.4%)
1 aa260 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[40-149] | Trans_reg_C[183-255]
- Domain count: 2
- Matched identifier: RROC_0653015
- Positioned domains: Response_reg 40-149 ; Response_reg 40-149 ; Trans_reg_C 183-255 ; Trans_reg_C 183-255
Cluster members and taxonomy
Representative gene: GCF_000008865#ECs_2707
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 386 585 · GCF_000008865
AssemblyASM886v2 · Complete Genomereference genome · haploid
Genome composition5 594 605 bp · 50,5% GCEscherichia coli O157:H7 str. Sakai
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key