1 MASE1#1
11-281 aa · 271 aa · 52.8% of protein
Raw token
MASE1:11:2.69e-50:281:299:299P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECs_0417
Histidine kinase, Classic
Escherichia coli O157:H7 str. Sakai · GCF_000008865
ClassHKTypeClassicLength513 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000008865#ECs_0417Stable P2CS identifier used across views.
GenomeGCF_000008865Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
MASE1HisKA_3HATPase_c
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage418 / 513 aa (81.5%)Merged over positioned domains only.
Domain description1 MASE1,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
316-380 aa · 65 aa · 12.7% of protein
Raw token
HisKA_3:316:1.38e-16:380:67:683 HATPase_c#3
424-505 aa · 82 aa · 16.0% of protein
Raw token
HATPase_c:424:2.07e-17:505:101:109- Raw architecture: MASE1:11:2.69e-50:281:299:299#HisKA_3:316:1.38e-16:380:67:68#HATPase_c:424:2.07e-17:505:101:109
- Domain description: 1 MASE1,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000008865::NC_002695.2::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span443762-445932Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000008865::NC_002695.2::G00001Context members
ECs_0417ECs_0418
Partner locus tags
ECs_0417ECs_0418
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for NP_308444.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECs_0417Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_002695.2Sequence record reported by the local genomic context database.
Genomic interval443 762-445 303 nt1 542 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span443 762-445 932 ntGCF_000008865::NC_002695.2::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000008865::NC_002695.2::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002695.2All displayed genes belong to this local TCS context.
Neighborhood span443 762-445 932 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
443 762 nt445 932 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS02120Use this link to inspect the representative gene detail.
PFAM architectureMASE1 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1414830
Simplified PFAM architecture for HKOC_1414830
PFAM domain coverage: 419 / 513 aa (81.7%)
1 aa513 aa
MASE1HisKA_3HATPase_c
- Simplified architecture: MASE1 + HisKA_3 + HATPase_c
- Raw architecture: MASE1[11-281] | HisKA_3[316-380] | HATPase_c[423-505]
- Domain count: 3
- Matched identifier: HKOC_1414830
- Positioned domains: MASE1 11-281 ; HisKA_3 316-380 ; HATPase_c 423-505
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS02120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 386 585 · GCF_000008865
AssemblyASM886v2 · Complete Genomereference genome · haploid
Genome composition5 594 605 bp · 50,5% GCEscherichia coli O157:H7 str. Sakai
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key