1 KdpD#1
13-221 aa · 209 aa · 24.4% of protein
Raw token
KdpD:13:8.7e-120:221:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EF_RS02760
Histidine kinase, Classic
Enterococcus faecalis V583 · GCF_000007785
ClassHKTypeClassicLength856 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007785#EF_RS02760Stable P2CS identifier used across views.
GenomeGCF_000007785Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
KdpDGAF_3HisKAHATPase_c
Protein length856 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage499 / 856 aa (58.3%)Merged over positioned domains only.
Domain description1 KdpD,1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa856 aa
Domain-by-domain annotation4 items
2 GAF_3#2
502-619 aa · 118 aa · 13.8% of protein
Raw token
GAF_3:502:0.0000000936:619:127:1293 HisKA#3
639-702 aa · 64 aa · 7.5% of protein
Raw token
HisKA:639:0.0000000000000521:702:64:644 HATPase_c#4
749-856 aa · 108 aa · 12.6% of protein
Raw token
HATPase_c:749:0.000000000000024:856:110:109- Raw architecture: KdpD:13:8.7e-120:221:210:210#GAF_3:502:0.0000000936:619:127:129#HisKA:639:0.0000000000000521:702:64:64#HATPase_c:749:0.000000000000024:856:110:109
- Domain description: 1 KdpD,1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007785::NC_004668.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span527240-530511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEF0570%2CEF_0570RefSeq proteinWP_010774173.1
Context group ID
GCF_000007785::NC_004668.1::G00002Context members
EF_RS02760EF_RS02765
Partner locus tags
EF_RS02760EF_RS02765
Partner old locus tags
EF0570%2CEF_0570EF0571%2CEF_0571
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010774173.1Primary protein accession used for annex mappings.
UniProt accessionQ8KU71Primary UniProt accession resolved in the annex database.
UniProt IDQ8KU71_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEF_RS02760Primary locus identifier stored in the genes table.
Old locus tagEF0570%2CEF_0570Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004668.1Sequence record reported by the local genomic context database.
Genomic interval527 240-529 810 nt2 571 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span527 240-530 511 ntGCF_000007785::NC_004668.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007785::NC_004668.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004668.1All displayed genes belong to this local TCS context.
Neighborhood span527 240-530 511 nt3 272 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
527 240 nt530 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EF_RS02760GCF_000007785#EF_RS02760
HKClassicCurrent focus
527 240-529 810 nt · Forward (+)
EF_RS02765GCF_000007785#EF_RS02765
RROmpR
529 822-530 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS02760The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + GAF_3 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0478391
Simplified PFAM architecture for HKOC_0478391
PFAM domain coverage: 603 / 856 aa (70.4%)
1 aa856 aa
KdpDDUF4118GAF_3HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + GAF_3 + HisKA + HATPase_c
- Raw architecture: KdpD[13-221] | DUF4118[374-479] | GAF_3[502-618] | HisKA[639-703] | HATPase_c[750-855]
- Domain count: 5
- Matched identifier: HKOC_0478391
- Positioned domains: KdpD 13-221 ; DUF4118 374-479 ; GAF_3 502-618 ; HisKA 639-703 ; HATPase_c 750-855
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS02760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 226 185 · GCF_000007785
AssemblyASM778v1 · Complete Genomehaploid
Genome composition3 359 974 bp · 37,5% GCEnterococcus faecalis V583
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key