1 HisKA#1
268-336 aa · 69 aa · 14.1% of protein
Raw token
HisKA:268:0.0000000000000101:336:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C_RS16920
Histidine kinase, Classic
Escherichia coli CFT073 · GCF_000007445
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007445#C_RS16920Stable P2CS identifier used across views.
GenomeGCF_000007445Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 490 aa (36.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
382-490 aa · 109 aa · 22.2% of protein
Raw token
HATPase_c:382:1.33e-25:490:110:109- Raw architecture: HisKA:268:0.0000000000000101:336:69:64#HATPase_c:382:1.33e-25:490:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007445::NC_004431.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3413218-3415410Genomic interval covered by the local TCS group.
Identifiers
Old locus tagc3564RefSeq proteinWP_000995840.1
Context group ID
GCF_000007445::NC_004431.1::G00026Context members
C_RS16920C_RS16925
Partner locus tags
C_RS16920C_RS16925
Partner old locus tags
c3564c3565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000995840.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2VAG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2VAG8_ECOL6Display identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC_RS16920Primary locus identifier stored in the genes table.
Old locus tagc3564Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004431.1Sequence record reported by the local genomic context database.
Genomic interval3 413 218-3 414 690 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 413 218-3 415 410 ntGCF_000007445::NC_004431.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007445::NC_004431.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004431.1All displayed genes belong to this local TCS context.
Neighborhood span3 413 218-3 415 410 nt2 193 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 413 218 nt3 415 410 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007445#C_RS16920The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533639
Simplified PFAM architecture for HKOC_1533639
PFAM domain coverage: 177 / 490 aa (36.1%)
1 aa490 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[268-336] | HATPase_c[383-490]
- Domain count: 2
- Matched identifier: HKOC_1533639
- Positioned domains: HisKA 268-336 ; HATPase_c 383-490
Cluster members and taxonomy
Representative gene: GCF_000007445#C_RS16920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 199 310 · GCF_000007445
AssemblyASM744v1 · Complete Genomehaploid
Genome composition5 231 428 bp · 50,5% GCEscherichia coli CFT073
Signal transduction countsGenes 68 · HK 33 · RR 35CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key