1 Response_reg#1
4-117 aa · 114 aa · 47.7% of protein
Raw token
Response_reg:4:1.15e-19:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
S_RS18920
Response regulator, unclassified
Shigella flexneri 2a str. 2457T · GCF_000007405
ClassRRTypeunclassifiedLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000007405#S_RS18920Stable P2CS identifier used across views.
GenomeGCF_000007405Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 239 aa (47.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.15e-19:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000007405::NC_004741.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3512930-3513649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagS3631%2CS_3631RefSeq proteinWP_000611281.1
Context group ID
GCF_000007405::NC_004741.1::G00026Context members
S_RS18920
Partner locus tags
S_RS18920
Partner old locus tags
S3631%2CS_3631
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000611281.1Primary protein accession used for annex mappings.
UniProt accessionQ0SXX3Primary UniProt accession resolved in the annex database.
UniProt IDQ0SXX3_SHIF8Display identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagS_RS18920Primary locus identifier stored in the genes table.
Old locus tagS3631%2CS_3631Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004741.1Sequence record reported by the local genomic context database.
Genomic interval3 512 930-3 513 649 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 512 930-3 513 649 ntGCF_000007405::NC_004741.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007405::NC_004741.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004741.1All displayed genes belong to this local TCS context.
Neighborhood span3 512 930-3 513 649 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 512 930 nt3 513 649 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
S_RS18920GCF_000007405#S_RS18920
RRunclassifiedCurrent focus
3 512 930-3 513 649 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0905282
Simplified PFAM architecture for RROC_0905282
PFAM domain coverage: 114 / 239 aa (47.7%)
1 aa239 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-117]
- Domain count: 1
- Matched identifier: RROC_0905282
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117
Cluster members and taxonomy
Representative gene: GCF_000006925#SF4099
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 198 215 · GCF_000007405
AssemblyASM740v1 · Complete Genomehaploid
Genome composition4 599 354 bp · 51,0% GCShigella flexneri 2a str. 2457T
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key