1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:0.0000000000005:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SP_RS01840
Response regulator OmpR family
Streptococcus pneumoniae TIGR4 · GCF_000006885
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006885#SP_RS01840Stable P2CS identifier used across views.
GenomeGCF_000006885Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 229 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-225 aa · 72 aa · 31.4% of protein
Raw token
Trans_reg_C:154:1.14e-27:225:74:77- Raw architecture: Response_reg:5:0.0000000000005:114:110:111#Trans_reg_C:154:1.14e-27:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006885::NC_003028.3::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span355159-355848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSP_0376RefSeq proteinWP_000518018.1
Context group ID
GCF_000006885::NC_003028.3::G00003Context members
SP_RS01840
Partner locus tags
SP_RS01840
Partner old locus tags
SP_0376
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000518018.1Primary protein accession used for annex mappings.
UniProt accessionC1CBF6Primary UniProt accession resolved in the annex database.
UniProt IDC1CBF6_STRP7Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSP_RS01840Primary locus identifier stored in the genes table.
Old locus tagSP_0376Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_003028.3Sequence record reported by the local genomic context database.
Genomic interval355 159-355 848 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span355 159-355 848 ntGCF_000006885::NC_003028.3::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006885::NC_003028.3::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_003028.3All displayed genes belong to this local TCS context.
Neighborhood span355 159-355 848 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
355 159 nt355 848 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SP_RS01840GCF_000006885#SP_RS01840
RROmpRCurrent focus
355 159-355 848 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006885#SP_RS01840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246111
Simplified PFAM architecture for RROC_1246111
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-226]
- Domain count: 2
- Matched identifier: RROC_1246111
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-226 ; Trans_reg_C 154-226
Cluster members and taxonomy
Representative gene: GCF_000006885#SP_RS01840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 170 187 · GCF_000006885
AssemblyASM688v1 · Complete Genomehaploid
Genome composition2 160 842 bp · 39,5% GCStreptococcus pneumoniae TIGR4
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key