1 PAS_8#1
31-92 aa · 62 aa · 17.6% of protein
Raw token
PAS_8:31:0.000000034:92:62:65P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TC_RS03810
Histidine kinase, Classic
Chlamydia muridarum str. Nigg · GCF_000006685
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006685#TC_RS03810Stable P2CS identifier used across views.
GenomeGCF_000006685Bacteria; Pseudomonadati; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia
Domain signature
Compact overview inferred from the domain field
PAS_8HisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 352 aa (63.1%)Merged over positioned domains only.
Domain description1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
151-214 aa · 64 aa · 18.2% of protein
Raw token
HisKA:151:0.0000000000000049:214:64:643 HATPase_c#3
256-351 aa · 96 aa · 27.3% of protein
Raw token
HATPase_c:256:0.00000000000000247:351:105:109- Raw architecture: PAS_8:31:0.000000034:92:62:65#HisKA:151:0.0000000000000049:214:64:64#HATPase_c:256:0.00000000000000247:351:105:109
- Domain description: 1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006685::NC_002620.2::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span894070-896334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTC0752%2CTC_0752RefSeq proteinWP_010231446.1
Context group ID
GCF_000006685::NC_002620.2::G00001Context members
TC_RS03810TC_RS03815
Partner locus tags
TC_RS03810TC_RS03815
Partner old locus tags
TC0752%2CTC_0752TC0753%2CTC_0753
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010231446.1Primary protein accession used for annex mappings.
UniProt accessionQ9PJS6Primary UniProt accession resolved in the annex database.
UniProt IDQ9PJS6_CHLMUDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTC_RS03810Primary locus identifier stored in the genes table.
Old locus tagTC0752%2CTC_0752Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002620.2Sequence record reported by the local genomic context database.
Genomic interval894 070-895 128 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span894 070-896 334 ntGCF_000006685::NC_002620.2::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006685::NC_002620.2::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002620.2All displayed genes belong to this local TCS context.
Neighborhood span894 070-896 334 nt2 265 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
894 070 nt896 334 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TC_RS03810GCF_000006685#TC_RS03810
HKClassicCurrent focus
894 070-895 128 nt · Forward (+)
TC_RS03815GCF_000006685#TC_RS03815
RRunclassified
895 171-896 334 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006685#TC_RS03810The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2788666
Simplified PFAM architecture for HKOC_2788666
PFAM domain coverage: 200 / 352 aa (56.8%)
1 aa352 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[31-81] | HisKA[152-214] | HATPase_c[256-341]
- Domain count: 3
- Matched identifier: HKOC_2788666
- Positioned domains: PAS 31-81 ; HisKA 152-214 ; HATPase_c 256-341
Cluster members and taxonomy
Representative gene: GCF_000006685#TC_RS03810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 243 161 · GCF_000006685
AssemblyASM668v1 · Complete Genomereference genome · haploid
Genome composition1 080 451 bp · 40,5% GCChlamydia muridarum str. Nigg
Signal transduction countsGenes 2 · HK 1 · RR 1CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumChlamydiotaClassChlamydiiaOrderChlamydialesFamilyChlamydiaceaeGenusChlamydia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Chlamydiota4Chlamydiia5Chlamydiales6Chlamydiaceae7Chlamydia
Related genes
Preview from the same derived genome key