1 Response_reg#1
10-116 aa · 107 aa · 45.5% of protein
Raw token
Response_reg:10:1.76e-25:116:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Z_RS26590
Response regulator OmpR family
Escherichia coli O157:H7 str. EDL933 · GCF_000006665
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006665#Z_RS26590Stable P2CS identifier used across views.
GenomeGCF_000006665Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 235 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-230 aa · 74 aa · 31.5% of protein
Raw token
Trans_reg_C:157:1.56e-27:230:74:77- Raw architecture: Response_reg:10:1.76e-25:116:108:111#Trans_reg_C:157:1.56e-27:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006665::NC_002655.2::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5189558-5190265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagZ5684RefSeq proteinWP_000805960.1
Context group ID
GCF_000006665::NC_002655.2::G00035Context members
Z_RS26590
Partner locus tags
Z_RS26590
Partner old locus tags
Z5684
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000805960.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagZ_RS26590Primary locus identifier stored in the genes table.
Old locus tagZ5684Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002655.2Sequence record reported by the local genomic context database.
Genomic interval5 189 558-5 190 265 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 189 558-5 190 265 ntGCF_000006665::NC_002655.2::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006665::NC_002655.2::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002655.2All displayed genes belong to this local TCS context.
Neighborhood span5 189 558-5 190 265 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 189 558 nt5 190 265 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Z_RS26590GCF_000006665#Z_RS26590
RROmpRCurrent focus
5 189 558-5 190 265 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS26590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016372
Simplified PFAM architecture for RROC_1016372
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1016372
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS26590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 864 · GCF_000006665
AssemblyASM666v1 · Chromosomehaploid
Genome composition5 620 522 bp · 50,5% GCEscherichia coli O157:H7 str. EDL933
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key