1 Response_reg#1
9-118 aa · 110 aa · 24.8% of protein
Raw token
Response_reg:9:2.88e-39:118:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
b2554
Response regulator, unclassified
Escherichia coli str. K-12 substr. MG1655 · GCF_000005845
ClassRRTypeunclassifiedLength444 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005845#b2554Stable P2CS identifier used across views.
GenomeGCF_000005845Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length444 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage230 / 444 aa (51.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa444 aa
Domain-by-domain annotation2 items
2 AAA_5#2
159-278 aa · 120 aa · 27.0% of protein
Raw token
AAA_5:159:0.0000348:278:128:135- Raw architecture: Response_reg:9:2.88e-39:118:110:111#AAA_5:159:0.0000348:278:128:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005845::NC_000913.3::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2687469-2688803Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000005845::NC_000913.3::G00025Context members
b2554
Partner locus tags
b2554
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for NP_417049.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagb2554Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_000913.3Sequence record reported by the local genomic context database.
Genomic interval2 687 469-2 688 803 nt1 335 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 687 469-2 688 803 ntGCF_000005845::NC_000913.3::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005845::NC_000913.3::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_000913.3All displayed genes belong to this local TCS context.
Neighborhood span2 687 469-2 688 803 nt1 335 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 687 469 nt2 688 803 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
b2554GCF_000005845#b2554
RRunclassifiedCurrent focus
2 687 469-2 688 803 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_143 domains in the representative PFAM annotation.
PFAM architecture for RROC_0317217
Simplified PFAM architecture for RROC_0317217
PFAM domain coverage: 353 / 444 aa (79.5%)
1 aa444 aa
Response_regSigma54_activatAAA_lid_14
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14
- Raw architecture: Response_reg[9-117] | Sigma54_activat[136-302] | AAA_lid_14[309-385]
- Domain count: 3
- Matched identifier: RROC_0317217
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Sigma54_activat 136-302 ; Sigma54_activat 136-302 ; AAA_lid_14 309-385 ; AAA_lid_14 309-385
Cluster members and taxonomy
Representative gene: GCF_000005845#b2554
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 145 · GCF_000005845
AssemblyASM584v2 · Complete Genomereference genome · haploid
Genome composition4 641 652 bp · 51,0% GCEscherichia coli str. K-12 substr. MG1655
Signal transduction countsGenes 63 · HK 31 · RR 32CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key