1 Response_reg#1
78-189 aa · 112 aa · 38.5% of protein
Raw token
Response_reg:78:8.02e-31:189:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS25690
Response regulator NarL family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeNarLLength291 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS25690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length291 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 291 aa (57.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa291 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
230-285 aa · 56 aa · 19.2% of protein
Raw token
HTH_LUXR:230:2.79e-16:285:56:58- Raw architecture: Response_reg:78:8.02e-31:189:112:111#HTH_LUXR:230:2.79e-16:285:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00073
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5096569-5097446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_52250RefSeq proteinWP_033734430.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00073Context members
BMYCO0001_RS25690
Partner locus tags
BMYCO0001_RS25690
Partner old locus tags
bmyco0001_52250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033734430.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS25690Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_52250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval5 096 569-5 097 446 nt878 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 096 569-5 097 446 ntGCF_000003925::NZ_CM000742.1::G00073
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00073Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span5 096 569-5 097 446 nt878 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 096 569 nt5 097 446 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS25690GCF_000003925#BMYCO0001_RS25690
RRNarLCurrent focus
5 096 569-5 097 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS25690The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg + GerE3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0585417
Simplified PFAM architecture for RROC_0585417
PFAM domain coverage: 229 / 291 aa (78.7%)
1 aa291 aa
HATPase_cResponse_regGerE
- Simplified architecture: HATPase_c + Response_reg + GerE
- Raw architecture: HATPase_c[4-67] | Response_reg[78-188] | GerE[231-284]
- Domain count: 3
- Matched identifier: RROC_0585417
- Positioned domains: HATPase_c 4-67 ; HATPase_c 4-67 ; Response_reg 78-188 ; Response_reg 78-188 ; GerE 231-284 ; GerE 231-284
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS25690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key