1 GAF_3#1
237-361 aa · 125 aa · 21.2% of protein
Raw token
GAF_3:237:0.0000000706:361:131:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS24580
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS24580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAF_3His_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage308 / 589 aa (52.3%)Merged over positioned domains only.
Domain description1 GAF_3,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
375-453 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:375:1.15e-29:453:80:803 HATPase_c#3
473-576 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:473:0.0000000000031:576:108:109- Raw architecture: GAF_3:237:0.0000000706:361:131:129#His_kinase:375:1.15e-29:453:80:80#HATPase_c:473:0.0000000000031:576:108:109
- Domain description: 1 GAF_3,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4858412-4860899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_50080RefSeq proteinWP_002184458.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00069Context members
BMYCO0001_RS24575BMYCO0001_RS24580
Partner locus tags
BMYCO0001_RS24575BMYCO0001_RS24580
Partner old locus tags
bmyco0001_50070bmyco0001_50080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002184458.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7W5I4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7W5I4_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS24580Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_50080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 859 130-4 860 899 nt1 770 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 858 412-4 860 899 ntGCF_000003925::NZ_CM000742.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 858 412-4 860 899 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 858 412 nt4 860 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS24575GCF_000003925#BMYCO0001_RS24575
RRLytTR
4 858 412-4 859 152 nt · Reverse (-)
BMYCO0001_RS24580GCF_000003925#BMYCO0001_RS24580
HKClassicCurrent focus
4 859 130-4 860 899 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS24580The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + GAF + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1114715
Simplified PFAM architecture for HKOC_1114715
PFAM domain coverage: 483 / 589 aa (82.0%)
1 aa589 aa
5TM-5TMR_LYTGAFHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[26-203] | GAF[237-359] | His_kinase[375-453] | HATPase_c[473-575]
- Domain count: 4
- Matched identifier: HKOC_1114715
- Positioned domains: 5TM-5TMR_LYT 26-203 ; GAF 237-359 ; His_kinase 375-453 ; HATPase_c 473-575
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS24580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key