1 Response_reg#1
5-117 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:5:5.19e-36:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS24425
Response regulator NarL family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS24425Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 215 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-209 aa · 57 aa · 26.5% of protein
Raw token
HTH_LUXR:153:2.13e-24:209:57:58- Raw architecture: Response_reg:5:5.19e-36:117:113:111#HTH_LUXR:153:2.13e-24:209:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00067
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4821406-4823645Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_49760RefSeq proteinWP_002016393.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00067Context members
BMYCO0001_RS24425BMYCO0001_RS24430
Partner locus tags
BMYCO0001_RS24425BMYCO0001_RS24430
Partner old locus tags
bmyco0001_49760bmyco0001_49770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002016393.1Primary protein accession used for annex mappings.
UniProt accessionJ8FIG4Primary UniProt accession resolved in the annex database.
UniProt IDJ8FIG4_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS24425Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_49760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 821 406-4 822 053 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 821 406-4 823 645 ntGCF_000003925::NZ_CM000742.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 821 406-4 823 645 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 821 406 nt4 823 645 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS24425GCF_000003925#BMYCO0001_RS24425
RRNarLCurrent focus
4 821 406-4 822 053 nt · Reverse (-)
BMYCO0001_RS24430GCF_000003925#BMYCO0001_RS24430
HKClassic
4 822 074-4 823 645 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS24425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906482
Simplified PFAM architecture for RROC_1906482
PFAM domain coverage: 170 / 215 aa (79.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-117] | GerE[153-209]
- Domain count: 2
- Matched identifier: RROC_1906482
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; GerE 153-209 ; GerE 153-209
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS24425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key