1 Response_reg#1
5-115 aa · 111 aa · 91.0% of protein
Raw token
Response_reg:5:8e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS23750
Response regulator, CheY family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS23750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 122 aa (91.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8e-36:115:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00066
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4685585-4685953Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_49080RefSeq proteinWP_000398592.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00066Context members
BMYCO0001_RS23750
Partner locus tags
BMYCO0001_RS23750
Partner old locus tags
bmyco0001_49080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000398592.1Primary protein accession used for annex mappings.
UniProt accessionJ8C2Y1Primary UniProt accession resolved in the annex database.
UniProt IDJ8C2Y1_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS23750Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_49080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 685 585-4 685 953 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 685 585-4 685 953 ntGCF_000003925::NZ_CM000742.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 685 585-4 685 953 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 685 585 nt4 685 953 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS23750GCF_000003925#BMYCO0001_RS23750
RRCheYCurrent focus
4 685 585-4 685 953 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS23750The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2402598
Simplified PFAM architecture for RROC_2402598
PFAM domain coverage: 111 / 122 aa (91.0%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2402598
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS23750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key