1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:2e-23:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS23665
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS23665Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 376 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
282-367 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:282:0.00000000198:367:104:109- Raw architecture: HisKA_3:178:2e-23:241:64:68#HATPase_c:282:0.00000000198:367:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4665936-4667665Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_49250RefSeq proteinWP_002184515.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00065Context members
BMYCO0001_RS23665BMYCO0001_RS23670
Partner locus tags
BMYCO0001_RS23665BMYCO0001_RS23670
Partner old locus tags
bmyco0001_49250bmyco0001_49240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002184515.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GUQ3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GUQ3_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS23665Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_49250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 665 936-4 667 066 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 665 936-4 667 665 ntGCF_000003925::NZ_CM000742.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 665 936-4 667 665 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 665 936 nt4 667 665 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS23665GCF_000003925#BMYCO0001_RS23665
HKClassicCurrent focus
4 665 936-4 667 066 nt · Forward (+)
BMYCO0001_RS23670GCF_000003925#BMYCO0001_RS23670
RRNarL
4 667 063-4 667 665 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS23665The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2641394
Simplified PFAM architecture for HKOC_2641394
PFAM domain coverage: 269 / 376 aa (71.5%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-148] | HisKA_3[178-241] | HATPase_c[280-339]
- Domain count: 3
- Matched identifier: HKOC_2641394
- Positioned domains: DesK_N 4-148 ; HisKA_3 178-241 ; HATPase_c 280-339
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS23665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key