1 HisKA#1
257-323 aa · 67 aa · 14.0% of protein
Raw token
HisKA:257:0.00000000207:323:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS22735
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS22735Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 479 aa (37.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
368-478 aa · 111 aa · 23.2% of protein
Raw token
HATPase_c:368:5.35e-21:478:112:109- Raw architecture: HisKA:257:0.00000000207:323:67:64#HATPase_c:368:5.35e-21:478:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4469466-4471548Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_46260RefSeq proteinWP_002129818.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00063Context members
BMYCO0001_RS22730BMYCO0001_RS22735
Partner locus tags
BMYCO0001_RS22730BMYCO0001_RS22735
Partner old locus tags
bmyco0001_46250bmyco0001_46260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002129818.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8H259Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8H259_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS22735Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_46260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 470 109-4 471 548 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 469 466-4 471 548 ntGCF_000003925::NZ_CM000742.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 469 466-4 471 548 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 469 466 nt4 471 548 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS22730GCF_000003925#BMYCO0001_RS22730
RROmpR
4 469 466-4 470 131 nt · Forward (+)
BMYCO0001_RS22735GCF_000003925#BMYCO0001_RS22735
HKClassicCurrent focus
4 470 109-4 471 548 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS22735The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1628155
Simplified PFAM architecture for HKOC_1628155
PFAM domain coverage: 174 / 479 aa (36.3%)
1 aa479 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[258-322] | HATPase_c[369-477]
- Domain count: 2
- Matched identifier: HKOC_1628155
- Positioned domains: HisKA 258-322 ; HATPase_c 369-477
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS22735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key