1 HAMP#1
205-269 aa · 65 aa · 12.9% of protein
Raw token
HAMP:205:0.00000000656:269:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS21660
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS21660Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 502 aa (48.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.00000000000000845:347:68:643 HATPase_c#3
394-501 aa · 108 aa · 21.5% of protein
Raw token
HATPase_c:394:4.73e-21:501:109:109- Raw architecture: HAMP:205:0.00000000656:269:65:69#HisKA:280:0.00000000000000845:347:68:64#HATPase_c:394:4.73e-21:501:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4286066-4288259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_44400RefSeq proteinWP_016127568.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00061Context members
BMYCO0001_RS21655BMYCO0001_RS21660
Partner locus tags
BMYCO0001_RS21655BMYCO0001_RS21660
Partner old locus tags
bmyco0001_44410bmyco0001_44400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016127568.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8H1H2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8H1H2_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS21660Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_44400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 286 751-4 288 259 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 286 066-4 288 259 ntGCF_000003925::NZ_CM000742.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 286 066-4 288 259 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 286 066 nt4 288 259 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS21655GCF_000003925#BMYCO0001_RS21655
RROmpR
4 286 066-4 286 767 nt · Forward (+)
BMYCO0001_RS21660GCF_000003925#BMYCO0001_RS21660
HKClassicCurrent focus
4 286 751-4 288 259 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS21660The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1463868
Simplified PFAM architecture for HKOC_1463868
PFAM domain coverage: 218 / 502 aa (43.4%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-268] | HisKA[280-346] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1463868
- Positioned domains: HAMP 225-268 ; HisKA 280-346 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS21660
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 51 total members. Page 1 / 2.
GCF_000003925#BMYCO0001_RS21660 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key