1 Response_reg#1
5-115 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:5:1.11e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS20620
Response regulator OmpR family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS20620Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 239 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:156:4.54e-38:232:77:77- Raw architecture: Response_reg:5:1.11e-37:115:111:111#Trans_reg_C:156:4.54e-38:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4094036-4096511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_42010RefSeq proteinWP_002129355.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00057Context members
BMYCO0001_RS20615BMYCO0001_RS20620
Partner locus tags
BMYCO0001_RS20615BMYCO0001_RS20620
Partner old locus tags
bmyco0001_42000bmyco0001_42010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002129355.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TN85Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TN85_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS20620Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_42010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 095 792-4 096 511 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 094 036-4 096 511 ntGCF_000003925::NZ_CM000742.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 094 036-4 096 511 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 094 036 nt4 096 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS20615GCF_000003925#BMYCO0001_RS20615
HKClassic
4 094 036-4 095 799 nt · Reverse (-)
BMYCO0001_RS20620GCF_000003925#BMYCO0001_RS20620
RROmpRCurrent focus
4 095 792-4 096 511 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS20620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905273
Simplified PFAM architecture for RROC_0905273
PFAM domain coverage: 188 / 239 aa (78.7%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_0905273
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS20620
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 112 total members. Page 1 / 3.
GCF_000003925#BMYCO0001_RS20620 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key