1 sCache_like#1
35-149 aa · 115 aa · 19.6% of protein
Raw token
sCache_like:35:2.42e-26:149:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS20615
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength587 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS20615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length587 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 587 aa (80.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa587 aa
Domain-by-domain annotation5 items
2 HAMP#2
165-234 aa · 70 aa · 11.9% of protein
Raw token
HAMP:165:0.00000000000853:234:70:693 PAS#3
245-351 aa · 107 aa · 18.2% of protein
Raw token
PAS:245:0.0000000000000282:351:112:1134 HisKA#4
360-427 aa · 68 aa · 11.6% of protein
Raw token
HisKA:360:1.48e-21:427:68:645 HATPase_c#5
472-581 aa · 110 aa · 18.7% of protein
Raw token
HATPase_c:472:7.72e-36:581:110:109- Raw architecture: sCache_like:35:2.42e-26:149:117:114#HAMP:165:0.00000000000853:234:70:69#PAS:245:0.0000000000000282:351:112:113#HisKA:360:1.48e-21:427:68:64#HATPase_c:472:7.72e-36:581:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4094036-4096511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_42000RefSeq proteinWP_002167588.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00057Context members
BMYCO0001_RS20615BMYCO0001_RS20620
Partner locus tags
BMYCO0001_RS20615BMYCO0001_RS20620
Partner old locus tags
bmyco0001_42000bmyco0001_42010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002167588.1Primary protein accession used for annex mappings.
UniProt accessionR8D160Primary UniProt accession resolved in the annex database.
UniProt IDR8D160_BACCEDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS20615Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_42000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval4 094 036-4 095 799 nt1 764 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 094 036-4 096 511 ntGCF_000003925::NZ_CM000742.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span4 094 036-4 096 511 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 094 036 nt4 096 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS20615GCF_000003925#BMYCO0001_RS20615
HKClassicCurrent focus
4 094 036-4 095 799 nt · Reverse (-)
BMYCO0001_RS20620GCF_000003925#BMYCO0001_RS20620
RROmpR
4 095 792-4 096 511 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS20615The current gene is the representative for this cluster.
PFAM architecturesCache_like + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1125685
Simplified PFAM architecture for HKOC_1125685
PFAM domain coverage: 449 / 587 aa (76.5%)
1 aa587 aa
sCache_likeHAMPPASHisKAHATPase_c
- Simplified architecture: sCache_like + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: sCache_like[33-149] | HAMP[188-234] | PAS[245-351] | HisKA[360-426] | HATPase_c[472-582]
- Domain count: 5
- Matched identifier: HKOC_1125685
- Positioned domains: sCache_like 33-149 ; HAMP 188-234 ; PAS 245-351 ; HisKA 360-426 ; HATPase_c 472-582
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS20615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key