1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:8.09e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS15985
Response regulator OmpR family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS15985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:150:9.88e-32:223:77:77- Raw architecture: Response_reg:5:8.09e-35:114:111:111#Trans_reg_C:150:9.88e-32:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3189282-3189959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_32140RefSeq proteinWP_002185181.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00052Context members
BMYCO0001_RS15985
Partner locus tags
BMYCO0001_RS15985
Partner old locus tags
bmyco0001_32140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002185181.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7W9P7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7W9P7_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS15985Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_32140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval3 189 282-3 189 959 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 189 282-3 189 959 ntGCF_000003925::NZ_CM000742.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span3 189 282-3 189 959 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 189 282 nt3 189 959 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS15985GCF_000003925#BMYCO0001_RS15985
RROmpRCurrent focus
3 189 282-3 189 959 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS15985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462544
Simplified PFAM architecture for RROC_1462544
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1462544
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS15985
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 47 over 47 total members. Page 1 / 1.
GCF_000003925#BMYCO0001_RS15985 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key