1 HAMP#1
164-226 aa · 63 aa · 13.8% of protein
Raw token
HAMP:164:0.00000000000029:226:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS15075
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS15075Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-296 aa · 67 aa · 14.7% of protein
Raw token
HisKA:230:0.000000000000401:296:67:643 HATPase_c#3
340-452 aa · 113 aa · 24.8% of protein
Raw token
HATPase_c:340:3.63e-32:452:113:109- Raw architecture: HAMP:164:0.00000000000029:226:63:69#HisKA:230:0.000000000000401:296:67:64#HATPase_c:340:3.63e-32:452:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2996958-2998996Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_30700RefSeq proteinWP_002128359.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00048Context members
BMYCO0001_RS15070BMYCO0001_RS15075
Partner locus tags
BMYCO0001_RS15070BMYCO0001_RS15075
Partner old locus tags
bmyco0001_30710bmyco0001_30700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128359.1Primary protein accession used for annex mappings.
UniProt accessionR8MW45Primary UniProt accession resolved in the annex database.
UniProt IDR8MW45_BACCXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS15075Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_30700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval2 997 629-2 998 996 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 996 958-2 998 996 ntGCF_000003925::NZ_CM000742.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span2 996 958-2 998 996 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 996 958 nt2 998 996 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS15070GCF_000003925#BMYCO0001_RS15070
RROmpR
2 996 958-2 997 632 nt · Forward (+)
BMYCO0001_RS15075GCF_000003925#BMYCO0001_RS15075
HKClassicCurrent focus
2 997 629-2 998 996 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS15075The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1899509
Simplified PFAM architecture for HKOC_1899509
PFAM domain coverage: 225 / 455 aa (49.5%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[179-226] | HisKA[230-295] | HATPase_c[341-451]
- Domain count: 3
- Matched identifier: HKOC_1899509
- Positioned domains: HAMP 179-226 ; HisKA 230-295 ; HATPase_c 341-451
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS15075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key