1 PAS_4#1
234-310 aa · 77 aa · 9.6% of protein
Raw token
PAS_4:234:0.00000162:310:81:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS14440
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS14440Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage448 / 801 aa (55.9%)Merged over positioned domains only.
Domain description2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa801 aa
Domain-by-domain annotation5 items
2 PAS_4#2
332-437 aa · 106 aa · 13.2% of protein
Raw token
PAS_4:332:6.09e-18:437:107:1103 PAS_9#3
467-569 aa · 103 aa · 12.9% of protein
Raw token
PAS_9:467:0.000000000558:569:105:1024 HisKA#4
587-647 aa · 61 aa · 7.6% of protein
Raw token
HisKA:587:0.000000000000997:647:61:645 HATPase_c#5
695-795 aa · 101 aa · 12.6% of protein
Raw token
HATPase_c:695:5.3e-26:795:104:109- Raw architecture: PAS_4:234:0.00000162:310:81:110#PAS_4:332:6.09e-18:437:107:110#PAS_9:467:0.000000000558:569:105:102#HisKA:587:0.000000000000997:647:61:64#HATPase_c:695:5.3e-26:795:104:109
- Domain description: 2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2878151-2880556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_28630RefSeq proteinWP_003190414.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00046Context members
BMYCO0001_RS14440
Partner locus tags
BMYCO0001_RS14440
Partner old locus tags
bmyco0001_28630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003190414.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6Z1H2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6Z1H2_BACMYDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS14440Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_28630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval2 878 151-2 880 556 nt2 406 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 878 151-2 880 556 ntGCF_000003925::NZ_CM000742.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span2 878 151-2 880 556 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 878 151 nt2 880 556 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS14440GCF_000003925#BMYCO0001_RS14440
HKClassicCurrent focus
2 878 151-2 880 556 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS14440The current gene is the representative for this cluster.
PFAM architecturePAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0554174
Simplified PFAM architecture for HKOC_0554174
PFAM domain coverage: 449 / 801 aa (56.1%)
1 aa801 aa
PAS_4PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_4[230-310] | PAS_4[331-437] | PAS_9[472-569] | HisKA[587-646] | HATPase_c[694-796]
- Domain count: 5
- Matched identifier: HKOC_0554174
- Positioned domains: PAS_4 230-310 ; PAS_4 331-437 ; PAS_9 472-569 ; HisKA 587-646 ; HATPase_c 694-796
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS14440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key