1 HAMP#1
288-355 aa · 68 aa · 11.4% of protein
Raw token
HAMP:288:0.00000000000153:355:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS13320
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS13320Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 594 aa (40.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation3 items
2 HisKA#2
375-439 aa · 65 aa · 10.9% of protein
Raw token
HisKA:375:0.000000000000675:439:65:643 HATPase_c#3
483-590 aa · 108 aa · 18.2% of protein
Raw token
HATPase_c:483:8.02e-21:590:109:109- Raw architecture: HAMP:288:0.00000000000153:355:68:69#HisKA:375:0.000000000000675:439:65:64#HATPase_c:483:8.02e-21:590:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2653048-2655515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_28240RefSeq proteinWP_002190077.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00040Context members
BMYCO0001_RS13315BMYCO0001_RS13320
Partner locus tags
BMYCO0001_RS13315BMYCO0001_RS13320
Partner old locus tags
bmyco0001_28250bmyco0001_28240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002190077.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6Z1C8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6Z1C8_BACMYDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS13320Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_28240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval2 653 731-2 655 515 nt1 785 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 653 048-2 655 515 ntGCF_000003925::NZ_CM000742.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span2 653 048-2 655 515 nt2 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 653 048 nt2 655 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS13315GCF_000003925#BMYCO0001_RS13315
RROmpR
2 653 048-2 653 734 nt · Forward (+)
BMYCO0001_RS13320GCF_000003925#BMYCO0001_RS13320
HKClassicCurrent focus
2 653 731-2 655 515 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS13320The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1086975
Simplified PFAM architecture for HKOC_1086975
PFAM domain coverage: 222 / 594 aa (37.4%)
1 aa594 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[306-355] | HisKA[375-439] | HATPase_c[484-590]
- Domain count: 3
- Matched identifier: HKOC_1086975
- Positioned domains: HAMP 306-355 ; HisKA 375-439 ; HATPase_c 484-590
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS13320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key