1 HAMP#1
171-241 aa · 71 aa · 15.0% of protein
Raw token
HAMP:171:0.000000000499:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS11700
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS11700Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 472 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:2.14e-16:312:68:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:4.57e-27:470:109:109- Raw architecture: HAMP:171:0.000000000499:241:71:69#HisKA:245:2.14e-16:312:68:64#HATPase_c:362:4.57e-27:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2359499-2361588Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_23620RefSeq proteinWP_033734005.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00036Context members
BMYCO0001_RS11695BMYCO0001_RS11700
Partner locus tags
BMYCO0001_RS11695BMYCO0001_RS11700
Partner old locus tags
bmyco0001_23610bmyco0001_23620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033734005.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6ZDU5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6ZDU5_BACMYDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS11700Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_23620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval2 360 170-2 361 588 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 359 499-2 361 588 ntGCF_000003925::NZ_CM000742.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span2 359 499-2 361 588 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 359 499 nt2 361 588 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS11695GCF_000003925#BMYCO0001_RS11695
RROmpR
2 359 499-2 360 173 nt · Forward (+)
BMYCO0001_RS11700GCF_000003925#BMYCO0001_RS11700
HKClassicCurrent focus
2 360 170-2 361 588 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS11700The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1696493
Simplified PFAM architecture for HKOC_1696493
PFAM domain coverage: 353 / 472 aa (74.8%)
1 aa472 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-312] | HATPase_c[361-469]
- Domain count: 4
- Matched identifier: HKOC_1696493
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS11700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key