1 HisKA#1
160-226 aa · 67 aa · 17.4% of protein
Raw token
HisKA:160:0.0000000000000503:226:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS11220
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS11220Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 385 aa (45.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
273-380 aa · 108 aa · 28.1% of protein
Raw token
HATPase_c:273:1.81e-27:380:109:109- Raw architecture: HisKA:160:0.0000000000000503:226:67:64#HATPase_c:273:1.81e-27:380:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2247829-2249671Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_22640RefSeq proteinWP_002085430.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00033Context members
BMYCO0001_RS11220BMYCO0001_RS11225
Partner locus tags
BMYCO0001_RS11220BMYCO0001_RS11225
Partner old locus tags
bmyco0001_22640bmyco0001_22650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002085430.1Primary protein accession used for annex mappings.
UniProt accessionR8HNW0Primary UniProt accession resolved in the annex database.
UniProt IDR8HNW0_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS11220Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_22640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval2 247 829-2 248 986 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 247 829-2 249 671 ntGCF_000003925::NZ_CM000742.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span2 247 829-2 249 671 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 247 829 nt2 249 671 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS11220GCF_000003925#BMYCO0001_RS11220
HKClassicCurrent focus
2 247 829-2 248 986 nt · Reverse (-)
BMYCO0001_RS11225GCF_000003925#BMYCO0001_RS11225
RROmpR
2 248 976-2 249 671 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS11220The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2564998
Simplified PFAM architecture for HKOC_2564998
PFAM domain coverage: 174 / 385 aa (45.2%)
1 aa385 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-226] | HATPase_c[274-380]
- Domain count: 2
- Matched identifier: HKOC_2564998
- Positioned domains: HisKA 160-226 ; HATPase_c 274-380
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS11220
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 132 total members. Page 1 / 3.
GCF_000003925#BMYCO0001_RS11220 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key