1 HisKA#1
162-221 aa · 60 aa · 16.2% of protein
Raw token
HisKA:162:0.000000000000401:221:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS09955
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS09955Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 371 aa (44.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
265-369 aa · 105 aa · 28.3% of protein
Raw token
HATPase_c:265:2.31e-20:369:109:109- Raw architecture: HisKA:162:0.000000000000401:221:61:64#HATPase_c:265:2.31e-20:369:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00030
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1975441-1976556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_20080RefSeq proteinWP_003189036.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00030Context members
BMYCO0001_RS09955
Partner locus tags
BMYCO0001_RS09955
Partner old locus tags
bmyco0001_20080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003189036.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS09955Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_20080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval1 975 441-1 976 556 nt1 116 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 975 441-1 976 556 ntGCF_000003925::NZ_CM000742.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span1 975 441-1 976 556 nt1 116 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 975 441 nt1 976 556 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS09955GCF_000003925#BMYCO0001_RS09955
HKClassicCurrent focus
1 975 441-1 976 556 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS09955The current gene is the representative for this cluster.
PFAM architectureHisK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2676089
Simplified PFAM architecture for HKOC_2676089
PFAM domain coverage: 291 / 371 aa (78.4%)
1 aa371 aa
HisK_NHisKAHATPase_c
- Simplified architecture: HisK_N + HisKA + HATPase_c
- Raw architecture: HisK_N[11-138] | HisKA[162-221] | HATPase_c[268-370]
- Domain count: 3
- Matched identifier: HKOC_2676089
- Positioned domains: HisK_N 11-138 ; HisKA 162-221 ; HATPase_c 268-370
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS09955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key