1 GAF#1
19-160 aa · 142 aa · 38.9% of protein
Raw token
GAF:19:0.000000000777:160:144:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS09840
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS09840Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 365 aa (82.7%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA_3#2
177-242 aa · 66 aa · 18.1% of protein
Raw token
HisKA_3:177:1.23e-16:242:68:683 HATPase_c#3
272-365 aa · 94 aa · 25.8% of protein
Raw token
HATPase_c:272:0.0000000000000316:365:109:109- Raw architecture: GAF:19:0.000000000777:160:144:133#HisKA_3:177:1.23e-16:242:68:68#HATPase_c:272:0.0000000000000316:365:109:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1948389-1950136Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_19850RefSeq proteinWP_220089392.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00029Context members
BMYCO0001_RS09840BMYCO0001_RS09845
Partner locus tags
BMYCO0001_RS09840BMYCO0001_RS09845
Partner old locus tags
bmyco0001_19850bmyco0001_19860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_220089392.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS09840Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_19850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval1 948 389-1 949 486 nt1 098 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 948 389-1 950 136 ntGCF_000003925::NZ_CM000742.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span1 948 389-1 950 136 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 948 389 nt1 950 136 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS09840GCF_000003925#BMYCO0001_RS09840
HKClassicCurrent focus
1 948 389-1 949 486 nt · Forward (+)
BMYCO0001_RS09845GCF_000003925#BMYCO0001_RS09845
RRNarL
1 949 501-1 950 136 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS09840The current gene is the representative for this cluster.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2718225
Simplified PFAM architecture for HKOC_2718225
PFAM domain coverage: 297 / 365 aa (81.4%)
1 aa365 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[17-161] | HisKA_3[177-241] | HATPase_c[278-364]
- Domain count: 3
- Matched identifier: HKOC_2718225
- Positioned domains: GAF_2 17-161 ; HisKA_3 177-241 ; HATPase_c 278-364
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS09840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key