1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:9.82e-40:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS07485
Response regulator CheV family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS07485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:9.35e-18:298:124:111- Raw architecture: CheW:17:9.82e-40:149:134:138#Response_reg:176:9.35e-18:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1483971-1484879Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_14960RefSeq proteinWP_002186241.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00024Context members
BMYCO0001_RS07485
Partner locus tags
BMYCO0001_RS07485
Partner old locus tags
bmyco0001_14960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002186241.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GWT7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GWT7_BACMYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS07485Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_14960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval1 483 971-1 484 879 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 483 971-1 484 879 ntGCF_000003925::NZ_CM000742.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span1 483 971-1 484 879 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 483 971 nt1 484 879 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS07485GCF_000003925#BMYCO0001_RS07485
RRCheVCurrent focus
1 483 971-1 484 879 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS07485The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568505
Simplified PFAM architecture for RROC_0568505
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0568505
- Positioned domains: CheW 18-149 ; CheW 18-149 ; Response_reg 176-295 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS07485
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 38 over 38 total members. Page 1 / 1.
GCF_000003925#BMYCO0001_RS07485 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key