1 HisKA_3#1
149-216 aa · 68 aa · 19.4% of protein
Raw token
HisKA_3:149:1.93e-22:216:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS06160
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS06160Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 351 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-342 aa · 91 aa · 25.9% of protein
Raw token
HATPase_c:252:4.66e-16:342:106:109- Raw architecture: HisKA_3:149:1.93e-22:216:68:68#HATPase_c:252:4.66e-16:342:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1223217-1224901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_12970RefSeq proteinWP_002011673.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00021Context members
BMYCO0001_RS06155BMYCO0001_RS06160
Partner locus tags
BMYCO0001_RS06155BMYCO0001_RS06160
Partner old locus tags
bmyco0001_12980bmyco0001_12970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002011673.1Primary protein accession used for annex mappings.
UniProt accessionR8HT51Primary UniProt accession resolved in the annex database.
UniProt IDR8HT51_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS06160Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_12970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval1 223 846-1 224 901 nt1 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 223 217-1 224 901 ntGCF_000003925::NZ_CM000742.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span1 223 217-1 224 901 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 223 217 nt1 224 901 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS06155GCF_000003925#BMYCO0001_RS06155
RRNarL
1 223 217-1 223 849 nt · Reverse (-)
BMYCO0001_RS06160GCF_000003925#BMYCO0001_RS06160
HKClassicCurrent focus
1 223 846-1 224 901 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS06160The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792513
Simplified PFAM architecture for HKOC_2792513
PFAM domain coverage: 160 / 351 aa (45.6%)
1 aa351 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[149-216] | HATPase_c[252-343]
- Domain count: 2
- Matched identifier: HKOC_2792513
- Positioned domains: HisKA_3 149-216 ; HATPase_c 252-343
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS06160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key