1 HAMP#1
287-355 aa · 69 aa · 11.4% of protein
Raw token
HAMP:287:0.0000000000172:355:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS06045
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength603 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS06045Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length603 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 603 aa (37.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa603 aa
Domain-by-domain annotation3 items
2 HisKA#2
381-444 aa · 64 aa · 10.6% of protein
Raw token
HisKA:381:4.52e-17:444:64:643 HATPase_c#3
489-580 aa · 92 aa · 15.3% of protein
Raw token
HATPase_c:489:4.3e-23:580:92:109- Raw architecture: HAMP:287:0.0000000000172:355:69:69#HisKA:381:4.52e-17:444:64:64#HATPase_c:489:4.3e-23:580:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1202258-1204069Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_13210RefSeq proteinWP_003188128.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00019Context members
BMYCO0001_RS06045
Partner locus tags
BMYCO0001_RS06045
Partner old locus tags
bmyco0001_13210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003188128.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6ZCB2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6ZCB2_BACMYDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS06045Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_13210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval1 202 258-1 204 069 nt1 812 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 202 258-1 204 069 ntGCF_000003925::NZ_CM000742.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span1 202 258-1 204 069 nt1 812 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 202 258 nt1 204 069 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS06045GCF_000003925#BMYCO0001_RS06045
HKClassicCurrent focus
1 202 258-1 204 069 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS06045The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1036972
Simplified PFAM architecture for HKOC_1036972
PFAM domain coverage: 211 / 603 aa (35.0%)
1 aa603 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[305-354] | HisKA[381-444] | HATPase_c[491-587]
- Domain count: 3
- Matched identifier: HKOC_1036972
- Positioned domains: HAMP 305-354 ; HisKA 381-444 ; HATPase_c 491-587
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS06045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key