1 HAMP#1
176-244 aa · 69 aa · 11.7% of protein
Raw token
HAMP:176:0.00000000000000511:244:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS05970
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS05970Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage348 / 591 aa (58.9%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 PAS#2
255-355 aa · 101 aa · 17.1% of protein
Raw token
PAS:255:0.0000109:355:113:1133 HisKA#3
364-431 aa · 68 aa · 11.5% of protein
Raw token
HisKA:364:4.03e-18:431:68:644 HATPase_c#4
478-587 aa · 110 aa · 18.6% of protein
Raw token
HATPase_c:478:6.59e-34:587:110:109- Raw architecture: HAMP:176:0.00000000000000511:244:69:69#PAS:255:0.0000109:355:113:113#HisKA:364:4.03e-18:431:68:64#HATPase_c:478:6.59e-34:587:110:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1185976-1188467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_13350RefSeq proteinWP_003188118.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00018Context members
BMYCO0001_RS05970BMYCO0001_RS05975
Partner locus tags
BMYCO0001_RS05970BMYCO0001_RS05975
Partner old locus tags
bmyco0001_13350bmyco0001_13340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003188118.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8BHG1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8BHG1_BACMYDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS05970Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_13350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval1 185 976-1 187 751 nt1 776 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 185 976-1 188 467 ntGCF_000003925::NZ_CM000742.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span1 185 976-1 188 467 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 185 976 nt1 188 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS05970GCF_000003925#BMYCO0001_RS05970
HKClassicCurrent focus
1 185 976-1 187 751 nt · Reverse (-)
BMYCO0001_RS05975GCF_000003925#BMYCO0001_RS05975
RROmpR
1 187 751-1 188 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS05970The current gene is the representative for this cluster.
PFAM architectureHisK_sensor + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1105054
Simplified PFAM architecture for HKOC_1105054
PFAM domain coverage: 357 / 591 aa (60.4%)
1 aa591 aa
HisK_sensorHAMPHisKAHATPase_c
- Simplified architecture: HisK_sensor + HAMP + HisKA + HATPase_c
- Raw architecture: HisK_sensor[38-163] | HAMP[193-244] | HisKA[364-431] | HATPase_c[478-588]
- Domain count: 4
- Matched identifier: HKOC_1105054
- Positioned domains: HisK_sensor 38-163 ; HAMP 193-244 ; HisKA 364-431 ; HATPase_c 478-588
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS05970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key