1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:4.47e-16:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS05835
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS05835Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 466 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:1.78e-18:304:67:643 HATPase_c#3
350-460 aa · 111 aa · 23.8% of protein
Raw token
HATPase_c:350:4.39e-33:460:111:109- Raw architecture: HAMP:168:4.47e-16:234:67:69#HisKA:238:1.78e-18:304:67:64#HATPase_c:350:4.39e-33:460:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1161013-1163088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_11440RefSeq proteinWP_002011591.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00017Context members
BMYCO0001_RS05835BMYCO0001_RS05840
Partner locus tags
BMYCO0001_RS05835BMYCO0001_RS05840
Partner old locus tags
bmyco0001_11440bmyco0001_11430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002011591.1Primary protein accession used for annex mappings.
UniProt accessionR8HST9Primary UniProt accession resolved in the annex database.
UniProt IDR8HST9_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS05835Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_11440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval1 161 013-1 162 413 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 161 013-1 163 088 ntGCF_000003925::NZ_CM000742.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span1 161 013-1 163 088 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 161 013 nt1 163 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS05835GCF_000003925#BMYCO0001_RS05835
HKClassicCurrent focus
1 161 013-1 162 413 nt · Reverse (-)
BMYCO0001_RS05840GCF_000003925#BMYCO0001_RS05840
RROmpR
1 162 417-1 163 088 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS05835The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1761651
Simplified PFAM architecture for HKOC_1761651
PFAM domain coverage: 224 / 466 aa (48.1%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-460]
- Domain count: 3
- Matched identifier: HKOC_1761651
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS05835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key