1 Response_reg#1
5-112 aa · 108 aa · 50.5% of protein
Raw token
Response_reg:5:2.87e-37:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS04550
Response regulator NarL family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS04550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 214 aa (75.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-204 aa · 53 aa · 24.8% of protein
Raw token
HTH_LUXR:152:1.52e-19:204:53:58- Raw architecture: Response_reg:5:2.87e-37:112:108:111#HTH_LUXR:152:1.52e-19:204:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span910495-912346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_8780RefSeq proteinWP_002087211.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00015Context members
BMYCO0001_RS04545BMYCO0001_RS04550
Partner locus tags
BMYCO0001_RS04545BMYCO0001_RS04550
Partner old locus tags
bmyco0001_8770bmyco0001_8780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002087211.1Primary protein accession used for annex mappings.
UniProt accessionR8HQC7Primary UniProt accession resolved in the annex database.
UniProt IDR8HQC7_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS04550Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_8780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval911 702-912 346 nt645 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span910 495-912 346 ntGCF_000003925::NZ_CM000742.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span910 495-912 346 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
910 495 nt912 346 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS04545GCF_000003925#BMYCO0001_RS04545
HKClassic
910 495-911 712 nt · Forward (+)
BMYCO0001_RS04550GCF_000003925#BMYCO0001_RS04550
RRNarLCurrent focus
911 702-912 346 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS04550The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1934709
Simplified PFAM architecture for RROC_1934709
PFAM domain coverage: 166 / 214 aa (77.6%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-204]
- Domain count: 2
- Matched identifier: RROC_1934709
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-204 ; GerE 151-204
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS04550
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 140 total members. Page 1 / 3.
GCF_000003925#BMYCO0001_RS04550 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key